- Links for Classroom Practice -

Lecture 13 Genome browser and genomic sequence analysis

A.) Displaying genomic dataset with UCSC browser

UCSC Genome Browser is a popular server for viewing genomic data -- pay attention to select the right genome release. Sign up with the service will allow you to save the analysis sessions and share the results with others. Example

Download and install the IGB genome browser, which you can run on your own computer

An example of a saved session , which will persist and you can send the link to collaborators

B.) How to obtain genomic sequence surrounding your gene?

* From genome browser - example
* For gneomes not available in public genome browser - use Fastacmd or your own Pyhon script

C.) Identifying TF and epigenetic regulator binding sites in the genome

Searching for TF binding sites in the DNA sequence using TFsiteScan or PROMO

- Links for Classroom Practice -

Lecture 13 Genome browser and genomic sequence analysis

A.) Displaying genomic dataset with UCSC browser

B.) How to obtain genomic sequence surrounding your gene?

C.) Identifying TF and epigenetic regulator binding sites in the genome

Links for previous lectures